Català Castellano
DEGREE CURRICULUM
MOLECULAR BASIS OF LIFE
Coordination:
ESPINET MESTRE, MARIA CARMEN
Academic year 2023-24
DEGREE CURRICULUM: MOLECULAR BASIS OF LIFE 2023-24

Subject's general information
Subject nameMOLECULAR BASIS OF LIFE
Code100502
SemesterPRIMER QUADRIMESTRE
Typology
DegreeCourseCharacterModality
Bachelor's Degree in Medicine1COMMON/COREAttendance-based
Course number of credits (ECTS)6
Type of activity, credits, and groupsOnly examination
CoordinationESPINET MESTRE, MARIA CARMEN
DepartmentBASIC MEDICAL SCIENCES
Important information on data processingConsult this link for more information.
Languagecatalan
Teaching staffE-mail addressesCredits taught by teacherOffice and hour of attention
ESPINET MESTRE, MARIA CARMENcarme.espinet@udl.cat0
Learning objectives

1- Know the structure of biomolecules.   

2- Establish relationships between structure and function of biomolecules.    

3- Understand the behavior of biomolecules in biological media.    

4- Know and know how to use the basic concepts of enzymology and the regulation of enzymatic activity.

Competences

COMPETENCES

The curriculum is methodologically organized so that students in addition to

acquire knowledge and that they know how to apply it, they must acquire competences and

professionals. Starting from this idea and in accordance with the MINISTERIAL ORDER

ECI / 332/2008, the training of graduates at the Lleida School of Medicine

will guarantee that the interested party has acquired the necessary knowledge to exercise the

following competencies:

General competences

PROFESSIONAL VALUES, ATTITUDES AND BEHAVIORS

 SCIENTIFIC FOUNDATIONS OF MEDICINE:

CG 7. Understand and recognize the normal structure and function of the human body, at the

molecular, cellular, tissue, organic and systems, in the different stages of life.

CG 8. Recognize the bases of normal human behavior and its alterations.

GC 9. Understand and recognize the effects, mechanisms and manifestations of the disease

on the structure and function of the human body.

CG 10. Understand and recognize the causative agents and risk factors that determine

the states of health and the development of the disease.

CG 11. Understand and recognize the effects of growth, development and

aging on the individual and his social environment.

CG 12. Understand the foundations of action, indications and efficacy of interventions

based on available scientific evidence.

INFORMATION MANAGEMENT:

CG 30. Know, critically assess and know how to use the sources of clinical information and

biomedical to obtain, organize, interpret and communicate scientific information and

sanitary.

CG 31. Knowing how to use information and communication technologies in activities

clinical, therapeutic, preventive and research.

CG 32. Maintain and use records with patient information for later

analysis, preserving the confidentiality of the data.

CRITICAL ANALYSIS AND INVESTIGATION:

CG 33. Having, in professional activity, a critical, creative point of view, with

constructive and research-oriented skepticism.

CG 34. Understand the importance and limitations of scientific thought in the

study, prevention and management of diseases.

CG 35. Be able to formulate hypotheses, collect and critically assess information

for problem solving, following the scientific method.

CG 36. Acquire basic training for research activity.

 

 

Subject contents

UNIT 1. Molecular organization in living beings. Chemical characteristics differentiates from living matter. Levels of molecular organzation in living beings: Bioelements. Biomolecules.

UNIT 2. Water and ions in aqueous solution. Biological importance of water. Water structure and physical-chemical properties. Interaction of water molecules with each other, and with other biological componenets. Ionic composition of  body medias. Acid-base balance. Buffer systems

UNIT 3. General principles of organic chemistry. Links between carbons. Carbonate skeletons Links with heteroatoms. Hydrocarbons. Concept of functional group. Stereochemistry. Fischer projection. Isomerism and types.

UNIT 4. Functional groups and classes of organic compounds. Functional groups with simple bonds: structure and characteristics of alcohols, ethers, peroxides, amines, thiols, thioethers, dithiols. Functional groups with multiple bonds: structure and characteristics of aldehydes, ketones, carboxylic acids, esters, amides, IMIDA, imines.

UNIT 5. Heterocycles. Heterocycles with a heteroatom in the skeleton of the cycle: pyrrole, furan, pyridine pyrano and derivatives. Heterocycles of more complex structure, quinoline, indole and derivatives. Heterocycles with more than one heteroatom: imidazole and derivatives, pyrimidine and pyrimidine bases, purine and purine bases. Nucleoside nucleotides.

UNIT 6. Carbohydrates. Generalities Classification. Monosaccharides: aldoses and ketoses. Stereochemistry of monosaccharides. Reactivity of monosaccharides. Derived monosaccharides. Oligosaccharides: the glycosidic bond. Nomenclature structure and properties of disaccharides. Polysaccharides: characteristics of structural, reserve and gelling polysaccharides. Glycosaminoglycans. Proteoglycans Glycoproteins

UNIT 7. Lipids. General characteristics and classification. Fatty acids. Acylglycerides. Glycerophospholipids. Sphingolipids: sphingophospholipids and sphingoglycolipids. Prostaglandins. Leukotrienes. Thromboxanes Isoprenoid lipids: terpenoids, carotenoids and steroids (sterols, acids and bile salts, steroid hormones). Pyrrolic lipids.

UNIT 8. Amino acids, peptides and proteins. Amino acids protein components. Structure and properties of amino acids. Rare and non-protein amino acids. Peptide bond. Peptides Proteins Primary, secondary, tertiary and quaternary structure of proteins. Folding of proteins. Structure-function relationship in proteins, examples. Structural characterization and physical-chemical properties of proteins.

UNIT 9. Biocatalysis. Molecular structure of enzymes. Mechanism of enzymatic reactions. General characteristics, active center, catalytic center and union center. specificity of enzymes. main classes of enzymes. Structural characteristics. Isozymes. Effect of the enzymes on the speed and on the equilibrium constant of the catalyzed reaction. Activation energy concept.

UNIT 10. Kinetics and regulation of enzymatic activity. Control of enzymatic activity. Influence on the speed of the enzymatic reactions of the pH, the ionic strength and the temperature. Enzymatic reactions with a single substrate and with several substrates. Kinetic constants Vmax, Kcat, Km. And S0.5. Alosterism Mechanism of activation of proenzyme (zymogens).

UNIT 11. Vitamins. Vitamins as cofactors, precursors of cofactors, or prosthetic groups of certain enzymes. Describe and explain the structure, function, activation process, places and mode of action of vitamins

PRACTICAL AGENDA: Seminar 1. Buffer systems. (2h) Seminar 2. Spectrophotometry. Endpoint and kinetic studies. (2h) Seminar 3. Chromatographic techniques. (2h) Problems 1. Enzymatic kinetics. (2h)

LABORATORY PRACTICES

Practice 1. Espectrophotometry (2h)

Practice 2. Determination of the concentration of serum protein. (2h)

Practice 3. Electroforesi. Proteynogram (3h)

Practice 4. Enzymatic kinetics. Assay of the activity of the enzyme alfa amylase. Kinetic constants calculation (3h)

DIRECTED ACTIVITY: Bibliographic works. Preparation and exhibition of the works (5h)

Methodology

Objective

On-Campus activities

1) Structure of the biomolecules.

Teoric sessions. Seminars. Laboratory. Computer room.

2) Relationship between structure and function of the biomolecules

Teoric sessions. Seminars. Laboratory. Computer room..

3) Biomolecules in the biologycal media.

Teoric sessions. Seminars. Laboratory. Computer room.

 4) Enzimology.

Teoric sessions. Seminars. Laboratory. Computer room.

 

Evaluations

 

 

TEO: teoria

PRO: Problemes i casos

SEM: Seminari

INF: Informàtica

CAM: Camp

VIS: Visites

ACD: Activitat dirigida                 

LAB: pràctiques laboratori

AVA: avaluació                                                           

S: setmana d’exàmens

Activity type

Summary description of the activity

Dedication (hours)

week

Training Objactive

TEO

Molecular organization in living organisms

1

 

1,2,3

TEO

Water and ions in aqueous solution

         3

 

1,2,3

TEO

General principles of organic chemistry

2

 

1,2,3

TEO

Functional groups and classes of organic compounds.

3

 

1,2,3

TEO

Heterocycles.

         1

 

1,2,3

TEO

Carbohydrates

4

 

1,2,3

TEO

Lipids

         3

 

1,2,3

TEO

Aminoacids, peptides and proteines

 7

 

1,2,3

TEO

Biocatalisis

        2

 

       2,4

TEO

Kinetics and regulation of enzymatic activity.

3

 

2,4

TEO

Vitamines

1

 

2,4

SEM

Buffers.

         2

 

1,2

SEM

Espectrophotometry

          2

 

      1,2,3

SEM

Cromatography

            2

 

1,2,3

PRO

Enzymatic kinetics

          2

 

      4

       INF

Activities in the computer room

3

 

     1,2,3,4

     ACD

Bibliographical works

         5

 

  1,2,3,4

LAB

Carbonated skeletons. Isomerism.

2

 

   1,2,3

LAB

Biomolecules.

2

 

 1,2,3

LAB

Protein electrophoresis

        3

 

 1,2,3

LAB

Enzymatic kinetics.

3

 

    4

AVA

Evaluation

         4

 

    1,2,3,4

 

 

 

 

 

 
To achieve objective goals and acquire the attributed competencies, the following activities will be programmed: A part of the subject is developed in sessions of exhibition of theoretical concepts of one hour of duration. These concepts are reinforced in sessions of seminars and problems of one hour of duration. The laboratory practices allow the best understanding of theoretical concepts and the acquisition of basic skills in the laboratory work. Bibliographical works will be carried out in groups of 20 students, on topics proposed and related to the subject. The presentation will be oral.

 

Development plan

 

 

- Theoretical classes: 100 presential. 

 

- Seminars: Eithe presentials or  virtuals  (Connection through the "videoconference" tab). Previously, the ppt that will be passed in class will have been attached in "resources". Students can print it out and follow the class better.

 

-Computer seminars:ppresentials

 

-Practices: presentials

 

 

- Exams: All face-to-face.

 

Evaluation

Learning evaluations

%final mark

Evaluation type

Theory

75%

Written tests (2) on contents and theoretical and practical concepts related to biochemistry and molecular biology.

Practices and seminars

10

Assessment of activities through other written tests

works

15%

Assessment of the ability to integrate concepts and their application in a transversal way.

Evaluation

Procedure

Time (hours)

  % in the total marks

2 Written tests on the subject's program

     4

30 +45   

Other written tests and exercises related to practices and seminars.

1

10

Oral presentations of the works

30min-1h    

15           

From 4 in exams 1 and 2, it will be averaged with the notes of the written tests of seminars and practices and work. If the result is 5 or more, the corresponding part of the subject is approved and it is not necessary to make up. If the exam grade is less than 4 or the average with the other tests is less than 5, the corresponding subject must be recovered.

 

Bibliography

 

1. Baynes JW, Dominiczak MH. 2011. Bioquímica Médica. 3ª edición. Ed. Elsevier

2. Branden C, Tooze J. 1999. Introduction to protein structure. 2n edition. Garland Publishing

3. Champe PC, Harvey RA, Ferrier DR. 2005. Bioquímica. 3a edición. Ed. Mc Graw-Hill Interamericana

4. Devlin TM. 2010. Texbook of Biochemistry with Clinical Correlations. 7th edition. Wiley-Liss Ed.

5. Ferrier DR. 2013. Biochemistry. Lippincott’s Illustrated Reviews. 6th ed. McGraw-Hill

6. Mathews CK, et al. 2013. Bioquímica. 4ª edición. McGraw-Hill Interamericana.

7. Rodwell VW, et al. 2015. Harper’s Illustrated Biochemistry. 30th ed. Ed. John Wiley– Sons.

9. Nelson DL, Cox MM. 2014. Lehninger. Principios de Bioquímica. 5ª ed. Ed. Omega.

10. Scriver CR, et al. 2001. The Metabolic & Molecular Basis of Inherited Disease. 8th Ed. McGraw-Hill. 4 vol.

11. Strayer L, Berg J, Tymoczko J. 2014. Bioquímica. 7ª ed. Ed. Reverté ( 6ª edició en català).

12. Strayer L, Berg J, Tymoczko J. 2014. Bioquímica. Curso básico. Ed. Reverté.

13. Voet D, Voet JG, Prat CW. 2016. Fundamentos de Bioquímica. 4a ed. Editorial Médica Panamericana

14. Vargas A 2020. Bioquimica Estructural y Biologia Molecular. Editorial Fleming.

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