Català Castellano
DEGREE CURRICULUM
HUMAN GENOMICS
Coordination:
FERREZUELO MUÑOZ, FRANCISCO
Academic year 2019-20
DEGREE CURRICULUM: HUMAN GENOMICS 2019-20

Subject's general information
Subject nameHUMAN GENOMICS
Code100503
Semester2D SEMESTER - DEGREE - JUN/SET
Typology
DegreeCourseCharacterModality
Bachelor's Degree in Medicine1COMMONAttendance-based
Course number of credits (ECTS)6
Type of activity, credits, and groups
Activity typePRALABPRAULATEORIA
Number of credits0.40.614
Number of groups12631
CoordinationFERREZUELO MUÑOZ, FRANCISCO
DepartmentBASIC MEDICAL SCIENCES
Important information on data processingConsult this link for more information.
LanguageCatalan 75%

Spanish 25%
Teaching staffE-mail addressesCredits taught by teacherOffice and hour of attention
CASALI TABERNET, ANDREUandreu.casali@udl.cat6,4
FERREZUELO MUÑOZ, FRANCISCOfrancisco.ferrezuelo@udl.cat4,6
LOPEZ ORTEGA, RICARDO ENRIQUEricard.lopez@udl.cat2,4
TORRES ROSELL, JORDIjordi.torres@udl.cat2
Learning objectives

The goal of this course is to provide the basic knowledge (see below) that is essential for those students who direct their professional career to areas of medicine where it is necessary to understand the molecular foundation of the pathological process. Genes, as the ultimate determinants of cellular function, are also often the cause for the molecular and cellular alterations that define a pathological framework. Many diseases of uncertain or unknown etiology at this time will surely find an explanation at the molecular level, either as a direct result of somatic genetic alterations, or by the greater predisposition of a particular genetic constitution. In any case, gene therapy will soon be a key element of medical practice, and the medical professional must now know its theoretical basis and, in the near future, its practical ones.

Objective

Activities

Class attendance

Hours professor

Hours Student

Acquire basic knowledge about the role of genes at the molecular level and their transmission in human populations

40 one-hour lectures

(single grup)

 

40

 

 

40

 

 

108

 

 

Solve basic problems about genetic analysis.

2 sessions - 2h / grup (3 grups)

+ 2 sessions - 3h / grup (3 grups)

 

10

30

24

Use and interpret a human genome database and design tools for genetic analysis by PCR.

 

Cytogenetic diagnostic and simulations

2 sessions - 2h / grup (Computer room)

(6 grups)
 

1 session - 2h / grup (Computer room)

(6 grups)

4

 

 

2

24

 

 

12

10

 

 

4

Activity at the laboratory: Analysis of a VNTR by PCR

2 sessions - 2h / grup  (12 grups)

4

48

4

 

 

60

154

150

*Hours Student = Hours of class attendance + hours of homework

Competences

 

Específics

Objectives

Evaluation

Acquire basic knowledge about the role of genes at the molecular level and their transmission in human populations

10 y 11

Multiple choice test and problem solving 

Generals

Activities

 

Manipulation of materials and basic laboratory techniques

27

Multiple choice test

Subject contents

Module 1. Structure and complexity of the human genome 4h

1.1 Nucleic Acids
1.2 DNA condensation. Chromatin and chromosomes
1.3 Structure of the gene at the molecular level
1.4 Levels of complexity of the human genome


Module 2. Maintenance and integrity of the human genome 4h

2.1 Basic mechanisms of DNA replication
2.2 Telomere termination and maintenance
2.3 Recombination and transposition
2.4 Mutations: types and causative agents
2.5 Repair mechanisms


Module 3. Gene expression 6h

3.1 The flow of genetic information
3.2 Transcription
3.3 The processing of eukaryotic messenger RNAs: "capping", polyadenylation and "splicing"
3.4 The genetic code
3.5 Main molecular components in the process of translating messenger RNAs to proteins
3.6 Translation


Module 4. Regulation of gene expression 4h

4.1 General concepts
4.2 Transcriptional regulation
4.3 Epigenetics
4.4 Posttranscriptional regulation
4.5 CRISPR and gene therapy


Module 5. Genetic Analysis 7h

5.1. Chromosomes and inheritance: Mitosis and Meiosis
5.2. Inheritance patterns in human families
5.3. Genetic variability. Mutations
5.4 Human genome mapping
5.5 Linkage analysis
5.6 Basic concepts of epigenetics


Module 6. Genetic Pathologies 6h

6.1 Chromosomopathies
6.2 Hereditary monogenic diseases
6.3 Mitochondrial inheritance
6.4 Dynamic mutations


Module 7. Population genetics 5h

7.1 Concept of the Mendelian population. Genotypic and phenotypic frequencies. Hardy-Weinberg equilibrium, deviations and practical applications
7.2 Basic concepts of developmental genetics
7.3 Basic concepts of cancer genetics
7.4 Evolutionary medicine


Module 8. Genetic diagnosis 4h

8.1. Chromosomal diagnosis (karyotype)
8.2. Molecular diagnosis (direct and indirect)
8.3. Genetic advice and ethical aspects


Problem Sessions

Problems / exercises M5 + 6 4h
Problems / exercises M7 3h
Problems / exercises M8 3h


Computer classroom sessions

PCR and sequencing of the human genome 2h
Ensembl: human genome database 2h
karyotype simulations 2h


Laboratory session

DNA analysis by PCR and electrophoresis 4h

Methodology

A part of the course is developed in sessions of one hour lectures about theoretical concepts. These concepts are reinforced with problem sessions in medium size groups. Laboratory sessions are dedicated to the analysis of a human polymorphism at the molecular level. There will be also some work with online computer tools and access to a human genome database.

Development plan

Activity

 

Description

Prof

H

Grups

Hours

 

 

(Module title or practical activity)

 

student

 

professor

Theory

M1

Structure and complexity of the human genome

JT

4

1

4

Theory

M2

Maintenance and integrity of the human genome

JT

4

1

4

Computer

 

PCR and human genome sequencing

JT

2

6

12

Theory

M3

Gene expression

FF

6

1

6

Theory

M4

Gene expression regulation

FF

4

1

4

Computer  

Ensembl: Human genome database

FF 2 6 12

Theory

M5

Genetic analysis

AC

7

1

7

Problems

 

Problems about genetic analysis

AC

4

3

12

Theory

M6

Genetic pathologies

RL

6

1

6

Theory

M7

Population genetics

AC

5

1

5

Problems

 

Problems about population genetics

AC

3

3

9

Theory

M8

Genetic diagnostic

RL

4

1

4

Problems

 

Problems about genetic diagnostic

AC

3

3

9

Computer

 

Karyotype simulations

RL

2

6

12

Laboratory

 

DNA analysis by PCR

AC

2

12

24

Laboratory

 

DNA analysis and electrophoresis

FF

2

12

24

 

 

 

 

 

 

 

 

 

 

 

60

 

154

 

Evaluation

During the course, there will be two written tests consisting of a part of multiple-choice questions on theoretical and practical knowledge and a part of planning and solving exercises / problems. Each part will have a different weight according to the following scheme:

 

Activity

Points

First test

43

Second test

57

 

First test

Contents:

Second test

Contents:

 

The scores (points) obtained in both tests are added to obtain a final score. To pass the course it is necessary to obtain 50 points in the final score. Those who fail to reach this threshold will be given a second chance in September.

 

 

 

Bibliography
Adaptations to the contents due to COVID-19

Module 5. Section 5.6 Basic concepts of epigenetics is removed.

Module 7. Sections 7.2 Basic concepts of developmental genetics and 7.3 Basic concepts of cancer genetics are removed.

Laboratory practice is cancelled.

Adaptations to the methodology due to COVID-19

Modules 5 and 7, as well as the computer-assisted session on karyotype simulations will be carried out by live videoconference. These will be recorded and made available to students.

Modules 6 and 8 will be taught through recordings (videoconference in asynchronous mode) that the teacher will make previously and will make available on the virtual campus to be watched by the students.

At the end of modules 6 and 8, live videoconferences will be held for the resolution of doubts that may have arisen from the watching of the recordings.

Adaptations to the development plan due to COVID-19

The number of class hours (videoconference) of module 5 is expanded from 7 to 8 hours.

Module 7 is reduced from 5 to 4 hours.

Laboratory practice is suppressed.

Adaptations to the evaluation due to COVID-19

All the exams of the subject will be online in writing using the virtual campus tests and questionnaires tool or orally using the videoconferencing tool. The September exam may be in the classroom.

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