Coordination: | FERREZUELO MUÑOZ, FRANCISCO |
Academic year 2019-20 |
Subject name | HUMAN GENOMICS | |||||||||||||||
Code | 100503 | |||||||||||||||
Semester | 2D SEMESTER - DEGREE - JUN/SET | |||||||||||||||
Typology |
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Course number of credits (ECTS) | 6 | |||||||||||||||
Type of activity, credits, and groups |
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Coordination | FERREZUELO MUÑOZ, FRANCISCO | |||||||||||||||
Department | BASIC MEDICAL SCIENCES | |||||||||||||||
Important information on data processing | Consult this link for more information. | |||||||||||||||
Language | Catalan 75%
Spanish 25% |
Teaching staff | E-mail addresses | Credits taught by teacher | Office and hour of attention |
CASALI TABERNET, ANDREU | andreu.casali@udl.cat | 6,4 | |
FERREZUELO MUÑOZ, FRANCISCO | francisco.ferrezuelo@udl.cat | 4,6 | |
LOPEZ ORTEGA, RICARDO ENRIQUE | ricard.lopez@udl.cat | 2,4 | |
TORRES ROSELL, JORDI | jordi.torres@udl.cat | 2 |
The goal of this course is to provide the basic knowledge (see below) that is essential for those students who direct their professional career to areas of medicine where it is necessary to understand the molecular foundation of the pathological process. Genes, as the ultimate determinants of cellular function, are also often the cause for the molecular and cellular alterations that define a pathological framework. Many diseases of uncertain or unknown etiology at this time will surely find an explanation at the molecular level, either as a direct result of somatic genetic alterations, or by the greater predisposition of a particular genetic constitution. In any case, gene therapy will soon be a key element of medical practice, and the medical professional must now know its theoretical basis and, in the near future, its practical ones.
Objective |
Activities |
Class attendance |
Hours professor |
Hours Student |
Acquire basic knowledge about the role of genes at the molecular level and their transmission in human populations |
40 one-hour lectures (single grup)
|
40
|
40
|
108
|
Solve basic problems about genetic analysis. |
2 sessions - 2h / grup (3 grups) + 2 sessions - 3h / grup (3 grups)
|
10 |
30 |
24 |
Use and interpret a human genome database and design tools for genetic analysis by PCR.
Cytogenetic diagnostic and simulations |
2 sessions - 2h / grup (Computer room) (6 grups) 1 session - 2h / grup (Computer room) (6 grups) |
4
2 |
24
12 |
10
4 |
Activity at the laboratory: Analysis of a VNTR by PCR |
2 sessions - 2h / grup (12 grups) |
4 |
48 |
4 |
|
|
60 |
154 |
150 |
*Hours Student = Hours of class attendance + hours of homework
Específics |
Objectives |
Evaluation |
Acquire basic knowledge about the role of genes at the molecular level and their transmission in human populations |
10 y 11 |
Multiple choice test and problem solving |
Generals |
Activities |
|
Manipulation of materials and basic laboratory techniques |
27 |
Multiple choice test |
Module 1. Structure and complexity of the human genome 4h
1.1 Nucleic Acids
1.2 DNA condensation. Chromatin and chromosomes
1.3 Structure of the gene at the molecular level
1.4 Levels of complexity of the human genome
Module 2. Maintenance and integrity of the human genome 4h
2.1 Basic mechanisms of DNA replication
2.2 Telomere termination and maintenance
2.3 Recombination and transposition
2.4 Mutations: types and causative agents
2.5 Repair mechanisms
Module 3. Gene expression 6h
3.1 The flow of genetic information
3.2 Transcription
3.3 The processing of eukaryotic messenger RNAs: "capping", polyadenylation and "splicing"
3.4 The genetic code
3.5 Main molecular components in the process of translating messenger RNAs to proteins
3.6 Translation
Module 4. Regulation of gene expression 4h
4.1 General concepts
4.2 Transcriptional regulation
4.3 Epigenetics
4.4 Posttranscriptional regulation
4.5 CRISPR and gene therapy
Module 5. Genetic Analysis 7h
5.1. Chromosomes and inheritance: Mitosis and Meiosis
5.2. Inheritance patterns in human families
5.3. Genetic variability. Mutations
5.4 Human genome mapping
5.5 Linkage analysis
5.6 Basic concepts of epigenetics
Module 6. Genetic Pathologies 6h
6.1 Chromosomopathies
6.2 Hereditary monogenic diseases
6.3 Mitochondrial inheritance
6.4 Dynamic mutations
Module 7. Population genetics 5h
7.1 Concept of the Mendelian population. Genotypic and phenotypic frequencies. Hardy-Weinberg equilibrium, deviations and practical applications
7.2 Basic concepts of developmental genetics
7.3 Basic concepts of cancer genetics
7.4 Evolutionary medicine
Module 8. Genetic diagnosis 4h
8.1. Chromosomal diagnosis (karyotype)
8.2. Molecular diagnosis (direct and indirect)
8.3. Genetic advice and ethical aspects
Problem Sessions
Problems / exercises M5 + 6 4h
Problems / exercises M7 3h
Problems / exercises M8 3h
Computer classroom sessions
PCR and sequencing of the human genome 2h
Ensembl: human genome database 2h
karyotype simulations 2h
Laboratory session
DNA analysis by PCR and electrophoresis 4h
A part of the course is developed in sessions of one hour lectures about theoretical concepts. These concepts are reinforced with problem sessions in medium size groups. Laboratory sessions are dedicated to the analysis of a human polymorphism at the molecular level. There will be also some work with online computer tools and access to a human genome database.
Activity |
|
Description |
Prof |
H |
Grups |
Hours |
|
|
(Module title or practical activity) |
|
student |
|
professor |
Theory |
M1 |
Structure and complexity of the human genome |
JT |
4 |
1 |
4 |
Theory |
M2 |
Maintenance and integrity of the human genome |
JT |
4 |
1 |
4 |
Computer |
|
PCR and human genome sequencing |
JT |
2 |
6 |
12 |
Theory |
M3 |
Gene expression |
FF |
6 |
1 |
6 |
Theory |
M4 |
Gene expression regulation |
FF |
4 |
1 |
4 |
Computer |
Ensembl: Human genome database |
FF | 2 | 6 | 12 | |
Theory |
M5 |
Genetic analysis |
AC |
7 |
1 |
7 |
Problems |
|
Problems about genetic analysis |
AC |
4 |
3 |
12 |
Theory |
M6 |
Genetic pathologies |
RL |
6 |
1 |
6 |
Theory |
M7 |
Population genetics |
AC |
5 |
1 |
5 |
Problems |
|
Problems about population genetics |
AC |
3 |
3 |
9 |
Theory |
M8 |
Genetic diagnostic |
RL |
4 |
1 |
4 |
Problems |
|
Problems about genetic diagnostic |
AC |
3 |
3 |
9 |
Computer |
|
Karyotype simulations |
RL |
2 |
6 |
12 |
Laboratory |
|
DNA analysis by PCR |
AC |
2 |
12 |
24 |
Laboratory |
|
DNA analysis and electrophoresis |
FF |
2 |
12 |
24 |
|
|
|
|
|
|
|
|
|
|
|
60 |
|
154 |
During the course, there will be two written tests consisting of a part of multiple-choice questions on theoretical and practical knowledge and a part of planning and solving exercises / problems. Each part will have a different weight according to the following scheme:
Activity |
Points |
First test |
43 |
Second test |
57 |
First test
Contents:
Second test
Contents:
The scores (points) obtained in both tests are added to obtain a final score. To pass the course it is necessary to obtain 50 points in the final score. Those who fail to reach this threshold will be given a second chance in September.
Module 5. Section 5.6 Basic concepts of epigenetics is removed.
Module 7. Sections 7.2 Basic concepts of developmental genetics and 7.3 Basic concepts of cancer genetics are removed.
Laboratory practice is cancelled.
Modules 5 and 7, as well as the computer-assisted session on karyotype simulations will be carried out by live videoconference. These will be recorded and made available to students.
Modules 6 and 8 will be taught through recordings (videoconference in asynchronous mode) that the teacher will make previously and will make available on the virtual campus to be watched by the students.
At the end of modules 6 and 8, live videoconferences will be held for the resolution of doubts that may have arisen from the watching of the recordings.
The number of class hours (videoconference) of module 5 is expanded from 7 to 8 hours.
Module 7 is reduced from 5 to 4 hours.
Laboratory practice is suppressed.
All the exams of the subject will be online in writing using the virtual campus tests and questionnaires tool or orally using the videoconferencing tool. The September exam may be in the classroom.